Resources

new

Review article on information theory-based splicing mutation analysis:

Caminsky et al. 2014, Videos describing this paper: short and long versions.

MutationForecaster

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Automated Splice Site and Exon Definition Server

User manual (select link to open)
Peer reviewed publications:
Mucaki et. al. 2013
Nalla Rogan  2005
Literature citations
Videos:  YouTube Tutorial,    Wiley Video Abstracts
Brief Review of Molecular Information Theory

Shannon Pipeline for mRNA Splicing Mutation Analysis

Product sheet
Manual (Cytognomix Online Subscription):  Shannon mutation analysis documentation – webservice
User reference guide  (CLC Bio Genomics Workbench and Server)
Guide to installation of trial webserver 
White paper describing capabilities and features
Peer reviewed publications:
Shirley et al. 2013
Videos
Stephanie Dorman and Ben Shirley (hosted by CLC bio)
2012: BioIT World,   TechAlliance
Presentations
2012 American Society of Human Genetics meeting, CLC bio Medical Genomics workshop
2013: Slides from Shannon Pipeline Webinar 2013 – presentation

Veridical

Peer reviewed publications:
Viner et al. 2014
Video
2014: Coby Viner at Compute Ontario

Ab initio sc probes (FISH, NGS enrichment, genomic microarrays)

Peer reviewed publications:
new
Khan et al. 2015
 
Khan et al. 2014.
Dorman et al. 2013
Khan et al. 2012
Newkirk et al. 2005
Mora et al. 2005
Knoll and Rogan 2003
Rogan et al. 2001
Probe hybridization protocol for scFISH
Hybridization enrichment:  sequence capture protocol for Next Generation Sequencing library preparation

Cytogenetic Biodosimetry

Application note
Peer reviewed publications and patents:
Rogan et al. 2014
Subasinghe et al. 2013
Li et al. 2012
Subasinghe et al. 2011
Subasinghe et al. 2010
US Patent 8,605,981 and patents pending (PCT/US11/59257 ).

 

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