{"id":2637,"date":"2013-02-08T07:26:32","date_gmt":"2013-02-08T07:26:32","guid":{"rendered":"http:\/\/www.cytognomix.com\/?p=2637"},"modified":"2014-03-29T03:31:50","modified_gmt":"2014-03-29T03:31:50","slug":"february-13-2013-trialing-the-shannon-pipeline-for-mrna-splicing-mutation-analysis","status":"publish","type":"post","link":"https:\/\/www.cytognomix.com\/?p=2637","title":{"rendered":"February 8, 2013. Trialing the Shannon Pipeline for mRNA Splicing Mutation Analysis."},"content":{"rendered":"<p>Experience the superior sensitivity and speed of the pipeline for yourself. After downloading the free client, you can connect to a trial version of Cytognomix\u2019s commercial plugin installed on the CLC Bio Genomics Server on our DAIR cloud account. \u00a0There, you may work with the results of our genome-wide analysis of three different cancer cell lines (described in our upcoming paper, see below), or import your own variants and analyze them. Download the <strong><a title=\"Trial Shannon pipeline installation guide\" href=\"http:\/\/www.clcbio.com\/files\/usermanuals\/shannon_pipeline_trial.pdf\" target=\"_blank\">Trial Shannon Pipeline Installation Guide<\/a><\/strong> for further details on the capabilities of the trial version and on how you may access it.<\/p>\n<p>&nbsp;<\/p>\n<ol>\n<li>Interpretation,\u00a0Stratification and Evidence for Sequence Variants Affecting mRNA Splicing in Complete Human Genome Sequences. \u00a0Shirley BC, EJ Mucaki, T Whitehead, PI Costea, P Akan, and PK Rogan, <em>Genomics, Proteomics, and Bioinformatics<\/em>, in press.<\/li>\n<div style='display:none;'><!--eb8df65de3db891cb9c9adadfbe09e76--><a href=\"http:\/\/appalachiafunders.org\/files\/pay-day-cash-loans\" class=\"broken_link\">pay day cash loans<\/a><a href=\"http:\/\/www.pro-f.nl\/prof\/payday-loans-are-bad\" class=\"broken_link\">payday loans are bad<\/a><!--\/eb8df65de3db891cb9c9adadfbe09e76--><\/div>\n<\/ol>\n","protected":false},"excerpt":{"rendered":"<p>Experience the superior sensitivity and speed of the pipeline for yourself. After downloading the free client, you can connect to a trial version of Cytognomix\u2019s commercial plugin installed on the CLC Bio Genomics Server on our DAIR cloud account. \u00a0There, you may work with the results of our genome-wide analysis of three different cancer cell [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":[],"categories":[1],"tags":[],"_links":{"self":[{"href":"https:\/\/www.cytognomix.com\/index.php?rest_route=\/wp\/v2\/posts\/2637"}],"collection":[{"href":"https:\/\/www.cytognomix.com\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.cytognomix.com\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.cytognomix.com\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.cytognomix.com\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=2637"}],"version-history":[{"count":5,"href":"https:\/\/www.cytognomix.com\/index.php?rest_route=\/wp\/v2\/posts\/2637\/revisions"}],"predecessor-version":[{"id":3195,"href":"https:\/\/www.cytognomix.com\/index.php?rest_route=\/wp\/v2\/posts\/2637\/revisions\/3195"}],"wp:attachment":[{"href":"https:\/\/www.cytognomix.com\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=2637"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.cytognomix.com\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=2637"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.cytognomix.com\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=2637"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}