{"id":2838,"date":"2013-10-05T20:50:44","date_gmt":"2013-10-05T20:50:44","guid":{"rendered":"http:\/\/www.cytognomix.com\/?page_id=2838"},"modified":"2015-02-08T22:00:57","modified_gmt":"2015-02-08T22:00:57","slug":"testimonials-for-the-shannon-pipeline","status":"publish","type":"page","link":"https:\/\/www.cytognomix.com\/?page_id=2838","title":{"rendered":"Testimonials for the Shannon pipeline"},"content":{"rendered":"<h2>Mike Nickerson, Ph.D., Research Fellow, Cancer and Inflammation Program, US National Cancer Institute:<\/h2>\n<blockquote><p>&#8220;The analytic tool is being applied to evaluate a variety of variants which can be difficult to interpret in terms of their effects on protein function.\u00a0 Analysis of variants for potential effects on splicing provides a tool to distinguish deleterious mutations from passenger variants and generates hypotheses that can be experimentally evaluated using PCR of reverse-transcribed tumor RNA.&#8221;<\/p><\/blockquote>\n<h2>Dr. med. Sebastian Beer,\u00a0Universit\u00e4tsklinikum Leipzig, Germany:<\/h2>\n<blockquote><p>&#8220;It&#8217;s a great work you and your colleagues have performed. I was guided to your homepage by a couple of publication of yours.&#8221;<\/p><\/blockquote>\n<h2>Mark Poznansky, CEO, Ontario Genomics Institute, Canada:<\/h2>\n<blockquote><p>\u201cCytognomix\u2019s Shannon pipeline is resolving significant data interpretation issues in cancer research.&#8221;<\/p><\/blockquote>\n<h2>Dee Wu, Ph.D., Chief, Technology Applications &amp; Translational Research, University of Oklahoma Health Sciences Center, USA:<\/h2>\n<blockquote><p>&#8220;Based on what I saw, it seems reasonably easy to run&#8230;\u00a0Thank you again, this is support right up to the top of the knowledge on\u00a0the product.&#8221;<\/p><\/blockquote>\n<h2>Hanna Koskiniemi-Kuendig, Ph.D., Department of Medical Genetics, University of Lausanne, Switzerland:<\/h2>\n<blockquote><p>&#8220;I was happy with the pipeline &#8211; it was easy to use and makes it feasible to analyze potential changes in splicing pattern in a large amount of data.\u00a0I do think that the pipeline is very promising and could be useful for us for the analysis of whole genome\/exome data.&#8221;<\/p><\/blockquote>\n<h2>Paola Benaglio, Ph.D. Candidate,\u00a0Department of Medical Genetics,\u00a0University of Lausanne:<\/h2>\n<blockquote><p>&#8220;It is indeed the first one which can provide high throughput results about the consequences of variants on splicing, and I was very eager to use it.\u00a0Since we have indeed obtained useful results&#8230;we are now discussing if it will be useful for the entire laboratory to subscribe a license, but I anticipate that we would be more interested in a CLC-free version, since we are rather using perl scripts and linux command lines for genome variant analysis.&#8221;<\/p><\/blockquote>\n","protected":false},"excerpt":{"rendered":"<p>Mike Nickerson, Ph.D., Research Fellow, Cancer and Inflammation Program, US National Cancer Institute: &#8220;The analytic tool is being applied to evaluate a variety of variants which can be difficult to interpret in terms of their effects on protein function.\u00a0 Analysis of variants for potential effects on splicing provides a tool to distinguish deleterious mutations from [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"open","template":"","meta":[],"tags":[],"_links":{"self":[{"href":"https:\/\/www.cytognomix.com\/index.php?rest_route=\/wp\/v2\/pages\/2838"}],"collection":[{"href":"https:\/\/www.cytognomix.com\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.cytognomix.com\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.cytognomix.com\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.cytognomix.com\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=2838"}],"version-history":[{"count":8,"href":"https:\/\/www.cytognomix.com\/index.php?rest_route=\/wp\/v2\/pages\/2838\/revisions"}],"predecessor-version":[{"id":3573,"href":"https:\/\/www.cytognomix.com\/index.php?rest_route=\/wp\/v2\/pages\/2838\/revisions\/3573"}],"wp:attachment":[{"href":"https:\/\/www.cytognomix.com\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=2838"}],"wp:term":[{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.cytognomix.com\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=2838"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}