Zenodo repository:\u00a0 Geostatistical Analysis of SARS-CoV-2 Positive Cases in the United States<\/a><\/p>\n Defence Canada IDEaS project: Locating emerging COVID19 hotspots in Ontario after community transmission by time-correlated, geospatial analysis\u00a0<\/a><\/p>\n Addressing large scale radiation incidents and accidents:\u00a0<\/strong><\/p>\n Article in PLOS One: Meeting radiation dosimetry capacity requirements of population-scale exposures …<\/a>. (Funded by High performance computing consortium: SOSCIP<\/a> and CytoGnomix)<\/p>\n How to: Protocol for Geostatistical Determination of Radiation Dosimetry Maps of Population-Scale Exposures\u00a0<\/a><\/p>\n Capacity of supercomputer version of Automated Dicentric Chromosome Identifier and Dose Estimator\u00a0 (ADCI) software: Automated Cytogenetic Biodosimetry at Population-Scale <\/a>and Radiation<\/a>, Radiation, 2021 (link to published article<\/a>).<\/p>\n Scalable, democratized access to ADCI:<\/p>\n Overview of Cloud version- ADCI_Online<\/a><\/p>\n Presentation to the International Atomic Energy Agency (CRP E35010)<\/a><\/p>\n Mucaki, E.J., Shirley, B.C. and Rogan, P.K., 2021. Improved radiation expression profiling in blood by sequential application of sensitive and specific gene signatures.\u00a0International Journal of Radiation Biology<\/i>, \u00a0\u00a0doi.org\/10.1080\/09553002.2021.1998709 \u00a0 \u00a0<\/a>Link to pdf: Improved radiation expression profiling… <\/a><\/p>\n Zhao, J.Z., Mucaki, E.J. and Rogan, P.K., 2018. Predicting ionizing radiation exposure using biochemically-inspired genomic machine learning.\u00a0F1000Research<\/i>,\u00a07<\/i>(233), p.233.\u00a0 \u00a0Link to open access article: https:\/\/f1000research.com\/articles\/7-233<\/a><\/p>\n Pan-cancer repository of validated natural and cryptic mRNA splicing mutations\u00a0 \u00a0(a major public resource of mRNA splicing mutations validated according to multiple lines of evidence of abnormal gene expression. )<\/p>\n Article in F1000Research: Pan-Cancer repository of …..<\/a><\/p>\n Presentation at the 2019 American College of Medical Genetics Annual Meeting:<\/p>\n Pan-cancer repository of validated natural and cryptic mRNA.ePoster<\/a><\/p>\n Caminsky et al. 2014<\/a>, Videos describing this paper: short <\/a>and long <\/a>versions.<\/p>\n <\/p>\n Links to the latest CytoGnomix products: Applications and consulting in Geostatistical Epidemiology Monitoring and discriminating infectious disease hotspots from high disease burden regions, eg. for COVID-19: Zenodo repository:\u00a0 Geostatistical Analysis of SARS-CoV-2 Positive Cases in the United States Defence Canada IDEaS project: Locating emerging COVID19 hotspots in Ontario after community transmission by time-correlated, geospatial analysis\u00a0 […]<\/p>\n","protected":false},"author":1,"featured_media":3512,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"tags":[164,170,120,127,115,130,173,129,174,122,131,128,177,125,176,143],"_links":{"self":[{"href":"https:\/\/www.cytognomix.com\/index.php?rest_route=\/wp\/v2\/pages\/2559"}],"collection":[{"href":"https:\/\/www.cytognomix.com\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.cytognomix.com\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.cytognomix.com\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.cytognomix.com\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=2559"}],"version-history":[{"count":80,"href":"https:\/\/www.cytognomix.com\/index.php?rest_route=\/wp\/v2\/pages\/2559\/revisions"}],"predecessor-version":[{"id":5174,"href":"https:\/\/www.cytognomix.com\/index.php?rest_route=\/wp\/v2\/pages\/2559\/revisions\/5174"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/www.cytognomix.com\/index.php?rest_route=\/wp\/v2\/media\/3512"}],"wp:attachment":[{"href":"https:\/\/www.cytognomix.com\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=2559"}],"wp:term":[{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.cytognomix.com\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=2559"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}Large scale Radiation Biodosimetry<\/h3>\n
Gene Expression Signatures for Radiation Biodosimetry<\/h3>\n
Large Scale Repository of Cancer Splicing Mutations<\/h3>\n
Interactive Website: Gene signatures for chemotherapy drug response<\/a><\/h3>\n
Demo (Windows): Automated Dicentric Chromosome Identifier and Dose Estimator\u00a0\u00a0<\/a><\/h3>\n
Review on information theory-based splicing mutation analysis:<\/h3>\n
MutationForecaster system<\/a><\/h3>\nLearn more<\/a>…<\/address>\n\u00a0<\/address>\n
Automated Splice Site and Exon Definition Server<\/a><\/h3>\nUser manual (select link to open)<\/address>\nPeer reviewed publications:<\/address>\nMucaki et. al. 2013<\/a><\/address>\nNalla Rogan \u00a02005<\/a><\/address>\nLiterature citations<\/a><\/address>\nVideos: \u00a0YouTube Tutorial<\/a>, \u00a0 \u00a0Wiley Video Abstracts<\/a><\/address>\nBrief Review of Molecular Information Theory<\/a><\/address>\n
<\/h2>\n
Shannon Pipeline for mRNA Splicing Mutation Analysis<\/a><\/h3>\nProduct sheet<\/a><\/address>\nManual (Cytognomix Online Subscription): \u00a0Shannon mutation analysis documentation – webservice<\/a><\/address>\nUser reference guide<\/a>\u00a0 (CLC Bio Genomics Workbench and Server)<\/address>\nGuide to installation of trial webserver<\/a>\u00a0<\/address>\nWhite paper<\/a>\u00a0describing capabilities and features<\/address>\nPeer reviewed publications:<\/address>\nShirley et al. 2013<\/a><\/address>\nVideos<\/address>\nStephanie Dorman and Ben Shirley<\/a> (hosted by CLC bio)<\/address>\n2012:\u00a0BioIT World<\/a>, \u00a0\u00a0TechAlliance<\/a><\/address>\nPresentations<\/address>\n2012 American Society of Human Genetics meeting, CLC bio Medical Genomics workshop<\/a><\/address>\n2013: Slides from\u00a0Shannon Pipeline Webinar 2013 – presentation<\/a><\/address>\n
<\/h2>\n
Veridical<\/h3>\nValidate predicted splicing mutations with RNASeq<\/strong><\/address>\nPeer reviewed publications:<\/address>\nViner et al. 2014<\/a><\/address>\nVideo<\/address>\n2014: Coby Viner at Compute Ontario<\/a><\/address>\n
<\/h2>\n
Ab initio sc probes (FISH, NGS enrichment, genomic microarrays)<\/h3>\nPeer reviewed publications:<\/address>\n
![\"new\"](\"http:\/\/www.cytognomix.com\/wp-content\/uploads\/2011\/05\/new.jpg\")
<\/a><\/address>\nKhan et al. 2015<\/a><\/address>\n\u00a0<\/address>\nKhan et al. 2014.<\/a><\/address>\nDorman et al. 2013<\/a><\/address>\nKhan et al. 2012<\/a><\/address>\nNewkirk et al. 2005<\/a><\/address>\nMora et al. 2005<\/a><\/address>\nKnoll and Rogan 2003<\/a><\/address>\nRogan et al. 2001<\/a><\/address>\nProbe hybridization protocol<\/a> for scFISH<\/address>\nHybridization enrichment<\/a>: \u00a0sequence capture protocol for Next Generation Sequencing library preparation<\/address>\n<\/h2>\n
Cytogenetic Biodosimetry<\/h3>\nApplication note<\/a><\/address>\nPeer reviewed publications and patents:<\/address>\nRogan et al. 2014<\/a><\/address>\nSubasinghe et al. 2013<\/a><\/address>\nLi et al. 2012<\/a><\/address>\nSubasinghe et al. 2011<\/address>\nSubasinghe et al. 2010<\/address>\nUS Patent\u00a08,605,981\u00a0<\/b>and patents pending (PCT\/US11\/59257 ).<\/address>\n","protected":false},"excerpt":{"rendered":"