{"text_format":"1","workbook":"xlsx","n_sheets":5,"sheets":["Primary(Maskminent&MEME-ChIP)","Primary(Four tools)","Cofactor(Maskminent&MEME-ChIP)","Cofactor(Maskminent&SeqGL)","All binding motifs"],"not_rendered":{"charts":0,"images":0,"macros":0,"external_links":0,"defined_names":0,"comments":0,"pivot_tables":0},"unopened":[],"bounds":{"document_bytes":16777216,"sheet_cells":100000,"rows_first":2000,"rows_last":500,"rows_between":2000,"halvings":0,"cell_chars":16384,"cell_head_chars":4096},"cells_cut":0,"cells_raw":0,"read":"whole","date_system":"1900"}

{"sheet":"Primary(Maskminent&MEME-ChIP)","index":0,"n_rows":105,"n_cols":3,"rows_kept":105,"cut":false,"hidden":false,"merged":[[1,1,1,2]]}
[null,"Supplementary Table S8 - Motif discovery tool comparison"]
[null,"Comparion between Maskminent and MEME-ChIP\non the ability of revealing primary binding motifs \n(analyzing multiple datasets of each TF)"]
[null,"Maskminent","MEME-ChIP (from top 500 peaks)"]
["ARID3A","×","×"]
["ATF1","√","√"]
["ATF2","√","√"]
["ATF3","√","√"]
["BACH1","√","√"]
["BATF","√","√"]
["BCL11A","√","√"]
["BHLHE40","√","√"]
["CEBPB","√","√"]
["CEBPD","√","√"]
["CREB1","×","√"]
["CREM","×","√"]
["CTCF","√","√"]
["CTCFL","√","√"]
["E2F4","√","√"]
["E2F6","×","√"]
["EBF1","√","√"]
["EGR1","√","√"]
["ELF1","√","√"]
["ELK1","√","√"]
["ELK4","√","√"]
["ER","√","√"]
["ESRRA","√","√"]
["ETS1","√","√"]
["FOS","√","√"]
["FOSL1","√","√"]
["FOSL2","√","√"]
["FOXA1","√","√"]
["FOXA2","√","√"]
["FOXM1","×","√"]
["FOXP2","√","√"]
["GABPA","√","√"]
["GATA1","√","√"]
["GATA2","√","√"]
["GATA3","√","√"]
["HNF4A","√","√"]
["HNF4G","√","√"]
["HSF1","×","√"]
["IKZF1","×","×"]
["IRF1","√","√"]
["IRF3","√","×"]
["IRF4","√","√"]
["JUN","√","√"]
["JUND","√","√"]
["MAFF","√","√"]
["MAFK","√","√"]
["MAX","√","√"]
["MEF2A","√","√"]
["MEF2C","√","√"]
["MXI1","√","√"]
["MYBL1","×","×"]
["MYC","√","√"]
["NANOG","×","×"]
["NFATC1","×","√"]
["NFE2","√","√"]
["NFIC","×","√"]
["NFYA","√","√"]
["NFYB","√","√"]
["NR2C2/TR4","×","√"]
["NR2F2","×","√"]
["NR3C1/GR","√","√"]
["NRF1","√","√"]
["PAX5","√","√"]
["PBX3","√","√"]
["POU2F2","√","√"]
["PRDM1","√","√"]
["RELA/NFKB","√","√"]
["REST/NRSF","√","√"]
["RFX5","√","√"]
["RUNX3","√","√"]
["RXRA","√","√"]
["SMAD5","×","×"]
["SP1","√","√"]
["SP2","√","√"]
["SP4","√","√"]
["SPI1/PU1","√","√"]
["SREBF1","×","√"]
["SREBF2","×","√"]
["SRF","√","√"]
["STAT1","√","√"]
["STAT2","×","√"]
["STAT3","√","√"]
["STAT5A","√","√"]
["TAL1","√","√"]
["TBP","×","√"]
["TCF12","√","√"]
["TCF3","√","√"]
["TCF7L2","√","√"]
["TEAD4","√","√"]
["THAP1","√","√"]
["USF1","√","√"]
["USF2","√","√"]
["YY1","√","√"]
["ZBTB33","√","√"]
["ZEB1","√","√"]
["ZKSCAN1","√","√"]
["ZNF143","√","√"]
["ZNF263","√","√"]
[]
["Total number of primary motifs:",98,98]
["Total number of primary motifs discovered:",80,92]
["Percentage:\n(discovered/all)",0.81630000000000003,0.93869999999999998]

{"sheet":"Primary(Four tools)","index":1,"n_rows":68,"n_cols":5,"rows_kept":68,"cut":false,"hidden":false,"merged":[[1,1,1,4],[63,1,63,4],[0,1,0,4],[67,1,67,3]]}
[null,"Supplementary Table S8 - Motif discovery tool comparison"]
[null,"Comparion between Maskminent, MEME-ChIP, SeqGL and HOMER\non the ability of revealing primary binding motifs #\n(on each of the datasets of sequence-specific TFs from Setty et al.)"]
["ChIP-seq dataset","Maskminent","MEME-ChIP from top 500 peaks","SeqGL from top 2000 peaks","HOMER "]
["wgEncodeHaibTfbsGm12878Atf3Pcr1x","×","√","√","√"]
["wgEncodeHaibTfbsGm12878BatfPcr1x","√","√","√","×"]
["wgEncodeHaibTfbsGm12878Cebpbsc150V0422111","×","√","×","×"]
["wgEncodeHaibTfbsGm12878Egr1Pcr2x","√","√","√","√"]
["wgEncodeHaibTfbsGm12878Elf1sc631V0416101","√","√","√","√"]
["wgEncodeHaibTfbsGm12878Ets1Pcr1x","√","√","√","√"]
["wgEncodeHaibTfbsGm12878GabpPcr2x","√","√","√","√"]
["wgEncodeHaibTfbsGm12878Irf4sc6059Pcr1x","√","√","√","×"]
["wgEncodeHaibTfbsGm12878Mef2aPcr1x","√","√","√","√"]
["wgEncodeHaibTfbsGm12878Mef2csc13268V0416101","√","√","√","√"]
["wgEncodeHaibTfbsGm12878Nfatc1sc17834V0422111","×","×","×","×"]
["wgEncodeHaibTfbsGm12878Nficsc81335V0422111","×","×","×","×"]
["wgEncodeHaibTfbsGm12878NrsfPcr1x","√","√","√","×"]
["wgEncodeHaibTfbsGm12878Pax5c20Pcr1x","√","√","√","√"]
["wgEncodeHaibTfbsGm12878Pax5n19Pcr1x","×","√","√","√"]
["wgEncodeHaibTfbsGm12878Pbx3Pcr1x","√","√","√","√"]
["wgEncodeHaibTfbsGm12878Pou2f2Pcr1x","√","√","√","√"]
["wgEncodeHaibTfbsGm12878Pu1Pcr1x","√","√","√","√"]
["wgEncodeHaibTfbsGm12878Runx3sc101553V0422111","√","√","√","√"]
["wgEncodeHaibTfbsGm12878RxraPcr1x","×","×","×","×"]
["wgEncodeHaibTfbsGm12878Sp1Pcr1x","√","√","×","√"]
["wgEncodeHaibTfbsGm12878SrfPcr2x","×","√","√","√"]
["wgEncodeHaibTfbsGm12878Stat5asc74442V0422111","×","×","×","×"]
["wgEncodeHaibTfbsGm12878Tcf12Pcr1x","√","√","√","√"]
["wgEncodeHaibTfbsGm12878Tcf3Pcr1x","√","√","√","√"]
["wgEncodeHaibTfbsGm12878Usf1Pcr2x","√","√","√","√"]
["wgEncodeHaibTfbsGm12878Zbtb33Pcr1x","√","√","√","√"]
["wgEncodeHaibTfbsGm12878Zeb1sc25388V0416102","√","√","√","√"]
["wgEncodeHaibTfbsH1hescAtf3V0416102","√","√","√","√"]
["wgEncodeHaibTfbsH1hescEgr1V0416102","√","√","√","√"]
["wgEncodeHaibTfbsH1hescGabpPcr1x","√","√","√","√"]
["wgEncodeHaibTfbsH1hescJundV0416102","√","√","√","√"]
["wgEncodeHaibTfbsH1hescNanogsc33759V0416102","×","×","×","√"]
["wgEncodeHaibTfbsH1hescNrsfV0416102","√","√","√","×"]
["wgEncodeHaibTfbsH1hescRxraV0416102","√","√","√","√"]
["wgEncodeHaibTfbsH1hescSp1Pcr1x","√","√","√","√"]
["wgEncodeHaibTfbsH1hescSrfPcr1x","√","√","√","√"]
["wgEncodeHaibTfbsH1hescTcf12Pcr1x","√","√","√","√"]
["wgEncodeHaibTfbsH1hescUsf1Pcr1x","√","√","√","√"]
["wgEncodeOpenChromChipGm12878Cmyc","√","√","√","√"]
["wgEncodeSydhTfbsGm12878Bhlhe40cIggmus","√","√","√","√"]
["wgEncodeSydhTfbsGm12878E2f4Iggmus","×","√","√","√"]
["wgEncodeSydhTfbsGm12878Ebf1sc137065Std","√","√","√","√"]
["wgEncodeSydhTfbsGm12878Elk112771Iggmus","√","√","√","√"]
["wgEncodeSydhTfbsGm12878JundStd","√","√","√","√"]
["wgEncodeSydhTfbsGm12878MaxIggmus","√","√","√","√"]
["wgEncodeSydhTfbsGm12878Nfe2sc22827Std","×","×","×","×"]
["wgEncodeSydhTfbsGm12878NfyaIggmus","√","√","√","√"]
["wgEncodeSydhTfbsGm12878Nrf1Iggmus","√","√","√","√"]
["wgEncodeSydhTfbsGm12878Rfx5200401194Iggmus","√","√","√","√"]
["wgEncodeSydhTfbsGm12878Stat1Std","×","×","×","×"]
["wgEncodeSydhTfbsGm12878Stat3Iggmus","×","×","×","×"]
["wgEncodeSydhTfbsGm12878TbpIggmus","×","√","√","√"]
["wgEncodeSydhTfbsGm12878Usf2Iggmus","√","√","√","√"]
["wgEncodeSydhTfbsGm12878Yy1Std","√","√","√","√"]
["wgEncodeSydhTfbsGm12878Znf143166181apStd","√","√","√","√"]
["wgEncodeSydhTfbsH1hescMaxUcd","√","√","√","√"]
["wgEncodeSydhTfbsH1hescNrf1Iggrab","√","√","√","√"]
["wgEncodeUwTfbsGm12878CtcfStd","√","√","√","√"]
[]
["Total number of ChIP-seq datasets:",59]
["Total number of datasets \non which primary binding motifs were discovered:",45,51,49,47]
["Percentage (discovered/all):",0.76270000000000004,0.86439999999999995,0.83050000000000002,0.79659999999999997]
[]
[null,"# The results of SeqGL and HOMER were directly obtained from Setty et al. (2015)."]

{"sheet":"Cofactor(Maskminent&MEME-ChIP)","index":2,"n_rows":9,"n_cols":2,"rows_kept":9,"cut":false,"hidden":false,"merged":[[1,0,1,1],[0,0,0,1]]}
["Supplementary Table S8 - Motif discovery tool comparison"]
["Cofactor motifs Maskminent revealed but MEME-ChIP did not, and corresponding primary TFs\n(analyzing multiple datasets of each TF)"]
["Cofactor motifs","Primary TFs"]
["SP family","CREM, E2F6, OCT2, RFX5, SUZ12, THAP1, UBTF, BCLAF1, CCNT2, CHD2, KAT2A, KDM5B, PHF8, RBBP5, RCOR1, RPB1, ATF2, ATF3, CEBPD, ELK1, ETS1, FOSL1, FOXP2, GABPA, NFKB, PAX5, SMAD5, SREBF2, STAT1, TCF7L2, TR4, YY1, ZBTB7A, CHD1, EZH2, GTF2B, HDAC1, INI1, PML, SAP30, SIN3A, TAF7"]
["IRF family","ATF1, CREM, FOXP2, NFE2, OCT2, RUNX3, EZH2, IKZF1"]
["GATA1-TAL1","NR2F2, STAT5A"]
["NRSF","TEAD4"]
["TEAD family","MYC, STAT3"]
["TFIIIC (B-box & A-box)","TCF12"]

{"sheet":"Cofactor(Maskminent&SeqGL)","index":3,"n_rows":8,"n_cols":2,"rows_kept":8,"cut":false,"hidden":false,"merged":[[0,0,0,1],[1,0,1,1]]}
["Supplementary Table S8 - Motif discovery tool comparison"]
["Cofactor motifs Maskminent revealed but SeqGL did not, and corresponding datasets\n(on 105 datasets from Setty et al.)"]
["Cofactor motifs","Datasets"]
["SP family","wgEncodeHaibTfbsGm12878Atf3Pcr1x\nwgEncodeHaibTfbsGm12878Bclaf101388V0416101\nwgEncodeHaibTfbsGm12878Ets1Pcr1x\nwgEncodeHaibTfbsGm12878Pax5c20Pcr1x\nwgEncodeHaibTfbsGm12878Pmlsc71910V0422111\nwgEncodeHaibTfbsGm12878SrfPcr2x\nwgEncodeHaibTfbsGm12878Taf1Pcr1x\nwgEncodeHaibTfbsGm12878Zbtb33Pcr1x\nwgEncodeOpenChromChipGm12878Cmyc\nwgEncodeSydhTfbsGm12878CfosStd\nwgEncodeSydhTfbsGm12878Chd1a301218aIggmus\nwgEncodeSydhTfbsGm12878E2f4Iggmus\nwgEncodeSydhTfbsGm12878Elk112771Iggmus\nwgEncodeSydhTfbsGm12878MaxIggmus\nwgEncodeSydhTfbsGm12878Nfe2sc22827Std\nwgEncodeSydhTfbsGm12878Rfx5200401194Iggmus\nwgEncodeSydhTfbsGm12878Sin3anb6001263Iggmus\nwgEncodeSydhTfbsGm12878Tr4Std\nwgEncodeHaibTfbsH1hescJundV0416102AlnRep0\nwgEncodeHaibTfbsH1hescP300V0416102\nwgEncodeHaibTfbsH1hescSin3ak20Pcr1x\nwgEncodeHaibTfbsH1hescTaf1V0416102"]
["IRF family","wgEncodeHaibTfbsGm12878Foxm1sc502V0422111\nwgEncodeHaibTfbsGm12878Pou2f2Pcr1x"]
["RUNX family","wgEncodeHaibTfbsGm12878Irf4sc6059Pcr1x\nwgEncodeSydhTfbsGm12878P300bStd"]
["CTCF","wgEncodeSydhTfbsGm12878Znf143166181apStd"]
["TFIIIC (B-box & A-box)","wgEncodeSydhTfbsGm12878TbpIggmus"]

{"sheet":"All binding motifs","index":4,"n_rows":110,"n_cols":6,"rows_kept":110,"cut":false,"hidden":false,"merged":[[1,0,1,16383],[0,0,0,5],[109,0,109,2]]}
["Supplementary Table S8 - Motif discovery tool comparison"]
["Comparison between five motif discovery tools (Maskminent, MEME, SeqGL, HOMER, gkm-SVM) on the ability to reveal binding motifs #"]
["ChIP-seq experiment","Motifs revealed by Maskminent","Motifs revealed by SeqGL \nfrom top 2000 peaks","Motifs revealed by MEME-ChIP from top 500 peaks","Motifs revealed by HOMER","Motifs revealed by gkm-SVM"]
["wgEncodeHaibTfbsGm12878Atf2sc81188V0422111","(None)","AP1, RUNX, PU1, IRF, EGR, MZF1","AP1, IRF, RUNX"]
["wgEncodeHaibTfbsGm12878Atf3Pcr1x","USF, SP","AP1, USF, CTCF, ZNF143","AP1, USF, ZNF143, NRF"]
["wgEncodeHaibTfbsGm12878BatfPcr1x","AP1*","AP1, PU1, IRF","AP1, IRF, RUNX","AP1, IRF, SP","AP1, IRF"]
["wgEncodeHaibTfbsGm12878Bcl11aPcr1x","IRF, RUNX","AP1, IRF, RUNX, LHX3, PU1","AP1, IRF, RUNX"]
["wgEncodeHaibTfbsGm12878Bcl3V0416101","(None)","AP1, EOMES, NFKB, GM397","NFKB"]
["wgEncodeHaibTfbsGm12878Bclaf101388V0416101","SP","ETS, CTCF, PU1, DCE, MYC, ZFX","(Not analyzed)"]
["wgEncodeHaibTfbsGm12878Cebpbsc150V0422111","IRF, RUNX","AP1, RUNX, PU1, IRF, NFKB, NKX3","CEBPB, IRF, RUNX, AP1"]
["wgEncodeHaibTfbsGm12878Ebf1sc137065Pcr1x","(Not analyzed)","EBF1, IRF, RUNX","EBF1, CTCF, IRF"]
["wgEncodeHaibTfbsGm12878Egr1Pcr2x","EGR1*","EGR1, ETS, AP1, ARNT","EGR1, NRF, ETS"]
["wgEncodeHaibTfbsGm12878Elf1sc631V0416101","ELF1, SP","ELF1, SP","ELF1, ZNF143, AP1, YY"]
["wgEncodeHaibTfbsGm12878Ets1Pcr1x","ETS1, ZBTB33, SP","ETS1, ZBTB33, RUNX","ETS1, ZBTB33, ZNF143"]
["wgEncodeHaibTfbsGm12878Foxm1sc502V0422111","IRF","FOXM1, PU1, AP1, RUNX, NFKB, EGR, PRDM","IRF, RUNX, AP1, NFKB"]
["wgEncodeHaibTfbsGm12878GabpPcr2x","GABP*","GABP","GABP, ZNF143, YY"]
["wgEncodeHaibTfbsGm12878Irf4sc6059Pcr1x","IRF4, RUNX","IRF4, AP1, PU1","IRF4, AP1, RUNX"]
["wgEncodeHaibTfbsGm12878Mef2aPcr1x","MEF2A, IRF, RUNX","MEF2A, IRF, RUNX, AP1","MEF2A, IRF, RUNX, AP1"]
["wgEncodeHaibTfbsGm12878Mef2csc13268V0416101","MEF2C, IRF, RUNX","MEF2C, ETS, AP1, IRF","MEF2C, IRF, RUNX, AP1","MEF2C, AP1, IRF","MEF2C"]
["wgEncodeHaibTfbsGm12878Mta3sc81325V0422111","IRF","IRF, RUNX, AP1, ETS","IRF, RUNX, AP1, MEF2"]
["wgEncodeHaibTfbsGm12878Nfatc1sc17834V0422111","(None)","AP1, PU1, GM397, IRF","AP1"]
["wgEncodeHaibTfbsGm12878Nficsc81335V0422111","(None)","IRF, RUNX, AP1, PU1, NFKB","IRF, RUNX, AP1"]
["wgEncodeHaibTfbsGm12878NrsfPcr1x","NRSF*","NRSF","NRSF"]
["wgEncodeHaibTfbsGm12878P300Pcr1x","IRF, RUNX","IRF, RUNX, AP1, NFKB, ARNT, ETS, TCF3","IRF, RUNX, AP1"]
["wgEncodeHaibTfbsGm12878Pax5c20Pcr1x","PAX5, SP","PAX5, IRF, RUNX, AP1, ETS","PAX5, IRF, RUNX, AP1"]
["wgEncodeHaibTfbsGm12878Pax5n19Pcr1x","(None)","PAX5, IRF, RUNX, AP1, PU1","PAX5, IRF, CTCF"]
["wgEncodeHaibTfbsGm12878Pbx3Pcr1x","PBX*","PBX, NFY, SP, TCF3","PBX, NFY, SP, ZNF143","PBX, NFY, SP, TCF3","PBX"]
["wgEncodeHaibTfbsGm12878Pmlsc71910V0422111","SP","ETS, E2F2, MAF","(None)"]
["wgEncodeHaibTfbsGm12878Pou2f2Pcr1x","POU2F2, IRF","POU2F2, ETS, E-box","POU2F2"]
["wgEncodeHaibTfbsGm12878Pu1Pcr1x","PU1*","PU1","PU1"]
["wgEncodeHaibTfbsGm12878Rad21V0416101","CTCF","CTCF","CTCF"]
["wgEncodeHaibTfbsGm12878Runx3sc101553V0422111","RUNX3, IRF","RUNX3, IRF","RUNX3, IRF, AP1"]
["wgEncodeHaibTfbsGm12878RxraPcr1x","(None)","ETS, CTCF, IRF, AP1","CTCF, IRF, AP1, USF","ETS, CTCF, IRF, AP1","CTCF"]
["wgEncodeHaibTfbsGm12878Six5Pcr1x","ZNF143","ZNF143, YY, ETS","ZNF143, YY"]
["wgEncodeHaibTfbsGm12878Sp1Pcr1x","SP1*","NFY, ETS, RUNX, NFATC2, IRF","SP1, NFY, NFATC2, PBX3"]
["wgEncodeHaibTfbsGm12878SrfPcr2x","SP, ETS","SRF, ETS, AP1, E2F1","SRF, SP, IRF, ETS"]
["wgEncodeHaibTfbsGm12878Stat5asc74442V0422111","IRF","AP1, IRF, RUNX, ETS, PU1","AP1, IRF, RUNX"]
["wgEncodeHaibTfbsGm12878Taf1Pcr1x","SP","YY, ETS, DCE","YY, ETS, TBP"]
["wgEncodeHaibTfbsGm12878Tcf12Pcr1x","TCF12*","TCF12, AP1","TCF12, AP1, IRF"]
["wgEncodeHaibTfbsGm12878Tcf3Pcr1x","TCF3*","TCF3, MYB, RUNX, ARNT","TCF3, IRF, AP1"]
["wgEncodeHaibTfbsGm12878Usf1Pcr2x","USF*","USF","USF, ZNF143, NFY, YY"]
["wgEncodeHaibTfbsGm12878Yy1sc281Pcr1x","(Not analyzed)","YY1","YY1, ZNF143, ETS"]
["wgEncodeHaibTfbsGm12878Zbtb33Pcr1x","ZBTB33, SP","ZBTB33, ZSCAN4","ZBTB33, ZNF143"]
["wgEncodeHaibTfbsGm12878Zeb1sc25388V0416102","ZEB1*","ZEB1, ETS","ZEB1"]
["wgEncodeOpenChromChipGm12878Cmyc","MYC, SP","MYC, YY, ETS","MYC, SP, YY"]
["wgEncodeOpenChromChipGm12878Ctcf","(Not anaylzed)","CTCF","CTCF"]
["wgEncodeSydhTfbsGm12878Bhlhe40cIggmus","BHLHE40","BHLHE40, ETS, IRF, USF","BHLHE40, AP1, SP"]
["wgEncodeSydhTfbsGm12878Brca1a300Iggmus","ZBTB33","ZBTB33","ZBTB33, ZNF143, SP, AP1"]
["wgEncodeSydhTfbsGm12878CfosStd","SP, NFY","AP1, NFY","NFY, SP, USF, PBX3"]
["wgEncodeSydhTfbsGm12878Chd1a301218aIggmus","SP","ETS, E-box","SP"]
["wgEncodeSydhTfbsGm12878Chd2ab68301Iggmus","(Not anaylzed)","ZBTB33, NFY","(Not analyzed)"]
["wgEncodeSydhTfbsGm12878Corestsc30189Iggmus","(None)","ZBTB33, IRF, YY, MAF","ZBTB33, IRF, NRSF, ZNF143"]
["wgEncodeSydhTfbsGm12878Ctcfsc15914c20Std","(Not analyzed)","CTCF","CTCF, B-box"]
["wgEncodeSydhTfbsGm12878E2f4Iggmus","SP","E2F4, NFY","E2F4, SP, NFY"]
["wgEncodeSydhTfbsGm12878Ebf1sc137065Std","EBF1*","EBF1, ETS","EBF1, RUNX"]
["wgEncodeSydhTfbsGm12878Elk112771Iggmus","ELK1, SP","ELK1","ELK1, SRF, ZNF143"]
["wgEncodeSydhTfbsGm12878Ikzf1iknuclaStd","IRF","IRF, RUNX, AP1, ETS","IRF, RUNX, AP1, ETS"]
["wgEncodeSydhTfbsGm12878JundStd","AP1*","AP1, IRF","AP1"]
["wgEncodeSydhTfbsGm12878MaxIggmus","MAX, SP","MAX, ETS, ARNT","MAX, ETS, YY, AP1"]
["wgEncodeSydhTfbsGm12878Mazab85725Iggmus","(Not anaylzed)","MAZ, ETS, NRF, EBF, NFY","(Not anaylzed)"]
["wgEncodeSydhTfbsGm12878Mxi1Iggmus","SP","MXI1, ETS, RFX, SP, ZBTB33","MXI1, ETS, RFX, YY"]
["wgEncodeSydhTfbsGm12878Nfe2sc22827Std","USF, SP","USF","USF, SP, ZNF143, NFY"]
["wgEncodeSydhTfbsGm12878NfkbTnfaIggrab","NFKB, IRF","NFKB, RUNX, IRF","NFKB, IRF, RUNX","NFKB, RUNX, IRF","NFKB"]
["wgEncodeSydhTfbsGm12878NfyaIggmus","NFY*","NFY","NFY, SP, ZNF143, PBX3"]
["wgEncodeSydhTfbsGm12878NfybIggmus","NFY*","NFY","(Not anaylzed)"]
["wgEncodeSydhTfbsGm12878Nrf1Iggmus","NRF1*","NRF1","NRF1, ZNF143, SP"]
["wgEncodeSydhTfbsGm12878P300bStd","IRF, RUNX","IRF, AP1, PU1, NFKB, GM397","IRF, RUNX, AP1"]
["wgEncodeSydhTfbsGm12878P300Iggmus","IRF, RUNX","IRF, RUNX, AP1, PU1, NFKB, ARNT","IRF, RUNX, AP1"]
["wgEncodeSydhTfbsGm12878Rad21Iggrab","CTCF","CTCF, HIC1","CTCF"]
["wgEncodeSydhTfbsGm12878Rfx5200401194Iggmus","RFX5, SP","RFX5, NFY","RFX5, NFY"]
["wgEncodeSydhTfbsGm12878Sin3anb6001263Iggmus","SP","ETS, MYC/MAX, RFX, YY, E2F","E2F, RFX, YY, NRSF"]
["wgEncodeSydhTfbsGm12878Smc3ab9263Iggmus","CTCF","CTCF","CTCF"]
["wgEncodeSydhTfbsGm12878Stat1Std","SP","SP, DCE, IRF","(None)"]
["wgEncodeSydhTfbsGm12878Stat3Iggmus","IRF","IRF, RUNX, AP1, PU1","IRF, RUNX, AP1"]
["wgEncodeSydhTfbsGm12878Tblr1ab24550Iggmus","IRF","IRF, RUNX, AP1, ETS, NFKB","IRF, RUNX, AP1, MEF2"]
["wgEncodeSydhTfbsGm12878TbpIggmus","B-box","TBP, ETS, RUNX, IRF","TBP, A-box, NFY"]
["wgEncodeSydhTfbsGm12878Tr4Std","SP","ETS, RUNX, E2F","TR, ETS, RUNX"]
["wgEncodeSydhTfbsGm12878Usf2Iggmus","USF*","USF","USF, ZNF143, NFY, YY"]
["wgEncodeSydhTfbsGm12878WhipIggmus","(None)","CTCF, ETS, RUNX","CTCF, ETS"]
["wgEncodeSydhTfbsGm12878Yy1Std","YY1*","YY1","YY1, ZNF143, ETS"]
["wgEncodeSydhTfbsGm12878Znf143166181apStd","ZNF143, CTCF","ZNF143, ETS","ZNF143"]
["wgEncodeSydhTfbsGm12878Zzz3Std","(None)","ETS","(None)"]
["wgEncodeUwTfbsGm12878CtcfStd","CTCF*","CTCF","CTCF"]
["wgEncodeHaibTfbsH1hescAtf3V0416102","AP1, SP, USF","AP1, SP, ETS","AP1, USF, ZNF143","AP1, ETS","AP1, CTCF"]
["wgEncodeHaibTfbsH1hescBcl11aPcr1x","SOX2-OCT4","OCT, SOX, E-box, TEAD, LHX3, ZFX","SOX2-OCT4, TEAD"]
["wgEncodeHaibTfbsH1hescCtcfsc5916V0416102","(Not analyzed)","CTCF","(Not analyzed)"]
["wgEncodeHaibTfbsH1hescEgr1V0416102","EGR1*","EGR1, ETS","EGR1"]
["wgEncodeHaibTfbsH1hescGabpPcr1x","GABP*","GABP, CTCF","GABP, ZNF143, YY"]
["wgEncodeHaibTfbsH1hescHdac2sc6296V0416102","(None)","TEAD, ZNF354C, ZIC3, TCF3, MEIS1","NRSF, SOX2-OCT4, CTCF"]
["wgEncodeHaibTfbsH1hescJundV0416102AlnRep0","AP1, SP","AP1, TEAD, E2A","AP1, SP, ETS","AP1, CREB, E2A","AP1"]
["wgEncodeHaibTfbsH1hescNanogsc33759V0416102","SOX","SOX2-OCT4, ZIC1, SOX, OCT","SOX2-OCT4"]
["wgEncodeHaibTfbsH1hescNrsfV0416102","NRSF*","NRSF","NRSF"]
["wgEncodeHaibTfbsH1hescP300Pcr1x","(Not analyzed)","TEAD, ETS, MZF1","(Not analyzed)"]
["wgEncodeHaibTfbsH1hescP300V0416102","SP","TEAD, OCT, FOX, MYCN, ZFP281, NKX3","SP"]
["wgEncodeHaibTfbsH1hescPou5f1sc9081V0416102","SOX2-OCT4*","SOX2-OCT4, CHR ","(Not analyzed)"]
["wgEncodeHaibTfbsH1hescRad21V0416102","CTCF","CTCF","CTCF"]
["wgEncodeHaibTfbsH1hescRxraV0416102","RXRA","RXRA, CTCF, ZIC2","RXRA, CTCF, SOX2-OCT4"]
["wgEncodeHaibTfbsH1hescSin3ak20Pcr1x","SP, NRSF","NRSF, TGIF1, DCE, ETS, YY, RFX ","NRSF, ZEB1"]
["wgEncodeHaibTfbsH1hescSix5Pcr1x","ZNF143","ZNF143, ETS","ZNF143"]
["wgEncodeHaibTfbsH1hescSp1Pcr1x","SP1*","SP1, NFY, NFKB, TEAD","SP1, NFY"]
["wgEncodeHaibTfbsH1hescSrfPcr1x","SRF*","SRF, AP1","SRF"]
["wgEncodeHaibTfbsH1hescTaf1V0416102","SP","YY, ETS, SMAD","TBP, YY"]
["wgEncodeHaibTfbsH1hescTcf12Pcr1xAlnRep0","TCF12*","TCF12, NANOG, PRDM, OCT, TEAD","TCF12, SP","TCF12, OCT, CTCF","TCF12, ZNF"]
["wgEncodeHaibTfbsH1hescUsf1Pcr1x","USF*","USF","USF, ZNF143, NFY"]
["wgEncodeSydhTfbsH1hescCtbp2Ucd","(None)","ZEB1, TEAD, MAZ, MZF1","(None)"]
["wgEncodeSydhTfbsH1hescMaxUcd","MAX*","MAX","MAX"]
["wgEncodeSydhTfbsH1hescNrf1Iggrab","NRF1*","NRF1","NRF1, ZNF143, SP"]
["wgEncodeSydhTfbsH1hescSuz12Ucd","(None)","GM397, ARNT, ZFP161","(None)"]
[]
["* The initial iPWM from the whole dataset shows the primary motif, so the Maskminent pipeline did not continue to reveal cofactor motifs using the masking and thresholding functionalities.\n# The results of SeqGL, gkm-SVM and HOMER were directly obtained from Setty et al. (2015). The results of MEME-ChIP were obtained from the Factorbook website created by Wang et al. (2012)."]